
Aware his presence only puts Scully and William in jeopardy Mulder once again disappears — but at least this time it is his own choice. A frustrated Agent Doggett tries to find Mulder so he can proceed with his investigation against Deputy Director Kersh, but Scully and Skinner finally convince him to drop his case. Yet even as Scully helps Agent Doggett and Agent Reyes on some of their cases she realizes William is still in danger. When she learns a religious cult wants her son dead she turns to the Lone Gunmen. But even they cannot prevent William from being kidnapped, a fact which forces Scully to make a painful decision. Yet even in her darkest hour she receives word that Mulder has been found — and is being held in a military brig for the murder of a man who cannot die.
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Episode 1
Nothing Important Happened Today (1)
Agent Doggett investigates the death of an EPA official after his car is forced off a bridge by a woman he picked up. He asks for assistance on the case…
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Episode 2
Nothing Important Happened Today II (2)
Doggett catches up with Shannon McMahon, the woman who the EPA official picked up. She claims to be a super soldier and that the people she has killed were poisoning…
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Episode 3
Dæmonicus
Doggett and Reyes investigate the murder of a couple in West Virginia that has all the signs of a satanic ritual killing. They link the murder to a doctor who…
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Episode 4
4-D
During a stakeout of murderer Irwin Lukesh, Doggett sees Reyes attacked by Lukesh, but then we see Reyes and Doggett in her apartment, apparently both fine. Elsewhere at the same…
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Episode 5
Lord of the Flies
When a stunt on a local cable reality show goes horribly wrong resulting in a man's death, Doggett and Reyes investigate. But when flies pour out of the victims eye…
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Episode 6
Trust No 1
Scully is approached by a couple who claim their baby has the same abilities as William and have information about the super soldier program; however, they will only talk to…
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Episode 7
John Doe
Scully and Reyes join forces to try and find Doggett when he goes missing. Doggett has his own problems, having woken up in jail in Mexico suffering from amnesia. With…
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Episode 8
Hellbound
Agent Reyes takes the lead while investigating an X-file case, surrounding a man found skinned alive after having visions of seeing other people appearing skinned alive. Reyes calls on Scully's…
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Episode 9
Provenance (1)
When pieces of the spaceship beached in Africa resurface, the conspiracy within the FBI attempts to hide the information from the X-Files, especially the one person for whom the pieces…
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Episode 10
Providence (2)
Scully is anxious to recover William from his kidnappers and takes matters into her own hands when the FBI's attempts to assist in the investigation are less than helpful. With…
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Episode 11
Audrey Pauley
After a car accident, Reyes finds herself in a very gray area, while Doggett desperately denies doctors' diagnoses about his partner, who witnesses a strange disappearance.
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Episode 12
Underneath
Scully, Doggett and Reyes investigate an old case that Doggett worked on as a cop in Brooklyn, dubbed "The Screwdriver Killer". They try to determine whether the man who was…
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Episode 13
Improbable
When Reyes uses numerology to connect the murders of several women to an obsessed serial killer, she and Scully become trapped with a mysterious checker-playing man who may or may…
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Episode 14
Scary Monsters
Agent Harrison talks Doggett and Reyes into investigating a boy's claim that monsters killed his mother, who was officially determined to have stabbed herself repeatedly.
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Episode 15
Jump the Shark
The agents ask the Lone Gunmen to help find their friendly foe Yves Adele Harlow after former Area 51 Man-In-Black Morris Fletcher claims she is one of the super-soldiers.
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Episode 16
William
Doggett catches someone in the X-files office trying to steal documents pertaining to Mulder's sister. The intruder is a severely scarred man who blames his disfigurement on Government conspirators. He…
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Episode 17
Release
When an FBI cadet with amazing profiling skills approaches Doggett, Reyes, and Scully with a lead on a suspect in a series of recent murders, he claims the same killer…
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Episode 18
Sunshine Days
Doggett and Reyes investigate a murder outside the house that the original Brady Bunch series was filmed in. The house is owned by a man named Oliver who is obsessed…
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Episode 19
The Truth (1)
After not knowing Fox Mulder's whereabouts for the last year, A.D. Skinner and Agent Scully learn he's being held for the murder of a military man he couldn't possibly have…
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Episode 20
The Truth (2)
When an unexpected person comes to Mulder's rescue, Mulder refuses to slip north over the border to safety. Instead, he heads southwest to the Anasazi ruins of New Mexico seeking…